Index

_

__init__() (CustomSummation method) (ExtendedCustomCVForce method) (SlicedNonbondedForce method)

A

addCollectiveVariable() (ExtendedCustomCVForce method) addEnergyParameterDerivative() (ExtendedCustomCVForce method) addException() (SlicedNonbondedForce method) addException_usingRMin() (SlicedNonbondedForce method) addExceptionParameterOffset() (SlicedNonbondedForce method) addGlobalParameter() (ExtendedCustomCVForce method) (SlicedNonbondedForce method)

addParticle() (SlicedNonbondedForce method) addParticle_usingRVdw() (SlicedNonbondedForce method) addParticleParameterOffset() (SlicedNonbondedForce method) addScalingParameter() (SlicedNonbondedForce method) addScalingParameterDerivative() (SlicedNonbondedForce method) addTabulatedFunction() (ExtendedCustomCVForce method) addTerm() (CustomSummation method)

C

createExceptionsFromBonds() (SlicedNonbondedForce method)

CustomSummation (class in openmmlab)

E

evaluate() (CustomSummation method)

evaluateDerivative() (CustomSummation method) ExtendedCustomCVForce (class in openmmlab)

G

getCollectiveVariable() (ExtendedCustomCVForce method) getCollectiveVariableName() (ExtendedCustomCVForce method) getCutoffDistance() (SlicedNonbondedForce method) getEnergyFunction() (ExtendedCustomCVForce method) getEnergyParameterDerivativeName() (ExtendedCustomCVForce method) getEwaldErrorTolerance() (SlicedNonbondedForce method) getExceptionParameterOffset() (SlicedNonbondedForce method) getExceptionParameters() (SlicedNonbondedForce method) getExceptionsUsePeriodicBoundaryConditions() (SlicedNonbondedForce method) getExpression() (CustomSummation method) getForceGroup() (ExtendedCustomCVForce method) (SlicedNonbondedForce method) getGlobalParameterDefaultValue() (ExtendedCustomCVForce method) (SlicedNonbondedForce method) getGlobalParameterName() (ExtendedCustomCVForce method) (SlicedNonbondedForce method) getIncludeDirectSpace() (SlicedNonbondedForce method) getInnerContext() (ExtendedCustomCVForce method) getLJPMEParameters() (SlicedNonbondedForce method) getLJPMEParametersInContext() (SlicedNonbondedForce method) getName() (ExtendedCustomCVForce method) (SlicedNonbondedForce method) getNonbondedMethod() (SlicedNonbondedForce method) getNonbondedMethodName() (SlicedNonbondedForce method) getNumArguments() (CustomSummation method) getNumCollectiveVariables() (ExtendedCustomCVForce method) getNumEnergyParameterDerivatives() (ExtendedCustomCVForce method) getNumExceptionParameterOffsets() (SlicedNonbondedForce method) getNumExceptions() (SlicedNonbondedForce method) getNumGlobalParameters() (ExtendedCustomCVForce method) (SlicedNonbondedForce method)

getNumParticleParameterOffsets() (SlicedNonbondedForce method) getNumParticles() (SlicedNonbondedForce method) getNumScalingParameterDerivatives() (SlicedNonbondedForce method) getNumScalingParameters() (SlicedNonbondedForce method) getNumSlices() (SlicedNonbondedForce method) getNumSubsets() (SlicedNonbondedForce method) getNumTabulatedFunctions() (ExtendedCustomCVForce method) getNumTerms() (CustomSummation method) getOverallParameters() (CustomSummation method) getParameter() (CustomSummation method) getParticleParameterOffset() (SlicedNonbondedForce method) getParticleParameters() (SlicedNonbondedForce method) getParticleSubset() (SlicedNonbondedForce method) getPerTermParameters() (CustomSummation method) getPlatform() (CustomSummation method) getPlatformProperties() (CustomSummation method) getPMEParameters() (SlicedNonbondedForce method) getPMEParametersInContext() (SlicedNonbondedForce method) getReactionFieldDielectric() (SlicedNonbondedForce method) getReciprocalSpaceForceGroup() (SlicedNonbondedForce method) getScalingParameter() (SlicedNonbondedForce method) getScalingParameterDerivativeName() (SlicedNonbondedForce method) getSwitchingDistance() (SlicedNonbondedForce method) getTabulatedFunction() (ExtendedCustomCVForce method) getTabulatedFunctionName() (ExtendedCustomCVForce method) getTerm() (CustomSummation method) getUseCudaFFT() (SlicedNonbondedForce method) getUseDispersionCorrection() (SlicedNonbondedForce method) getUseSwitchingFunction() (SlicedNonbondedForce method)

S

setCutoffDistance() (SlicedNonbondedForce method) setEnergyFunction() (ExtendedCustomCVForce method) setEwaldErrorTolerance() (SlicedNonbondedForce method) setExceptionParameterOffset() (SlicedNonbondedForce method) setExceptionParameters() (SlicedNonbondedForce method) setExceptionsUsePeriodicBoundaryConditions() (SlicedNonbondedForce method) setForceGroup() (ExtendedCustomCVForce method) (SlicedNonbondedForce method) setGlobalParameterDefaultValue() (ExtendedCustomCVForce method) (SlicedNonbondedForce method) setGlobalParameterName() (SlicedNonbondedForce method) setIncludeDirectSpace() (SlicedNonbondedForce method) setLJPMEParameters() (SlicedNonbondedForce method) setName() (ExtendedCustomCVForce method) (SlicedNonbondedForce method)

setNonbondedMethod() (SlicedNonbondedForce method) setParameter() (CustomSummation method) setParticleParameterOffset() (SlicedNonbondedForce method) setParticleParameters() (SlicedNonbondedForce method) setParticleSubset() (SlicedNonbondedForce method) setPMEParameters() (SlicedNonbondedForce method) setReactionFieldDielectric() (SlicedNonbondedForce method) setReciprocalSpaceForceGroup() (SlicedNonbondedForce method) setScalingParameter() (SlicedNonbondedForce method) setScalingParameterDerivative() (SlicedNonbondedForce method) setSwitchingDistance() (SlicedNonbondedForce method) setTerm() (CustomSummation method) setUseCuFFT() (SlicedNonbondedForce method) setUseDispersionCorrection() (SlicedNonbondedForce method) setUseSwitchingFunction() (SlicedNonbondedForce method) SlicedNonbondedForce (class in openmmlab)

U

update() (CustomSummation method) updateParametersInContext() (ExtendedCustomCVForce method) (SlicedNonbondedForce method)

usesPeriodicBoundaryConditions() (ExtendedCustomCVForce method) (SlicedNonbondedForce method)